Package index • hiaR

Inspect reference data

Functions to get an overview of the available reference data.

get_disease_filenames(): Get disease filenames

get_disease_names(): Get disease directory names

get_population_filenames(): Get population filenames

get_population_names(): Get population directory names

get_risk_factor_filenames(): Get risk factor filenames

get_risk_factor_names(): Get risk factor directory names

get_simulation_names(): Get simulation directory names

Configuration

Functions for configuring DYNAMO-HIA simulations.

configure_disease(): Configure a disease

configure_relative_risk(): Configure a relative risk

configure_risk_factor(): Configure a risk factor

configure_scenario(): Configure a scenario

create_simulation_dir(): Create a simulation directory with configuration file

Run DYNAMO-HIA from R

Run one or multiple simulations using the DYNAMO-HIA Java program.

run_dynamo_hia(): Run the DYNAMO-HIA simulation

download_github_release(): Download and extract GitHub release asset

Load simulation results

Load the results of a DYNAMO-HIA simulation.

load_simulation_results(): Load results from DYNAMO-HIA simulation

Plotting

Functions for plotting DYNAMO-HIA results.

plot_incidence(): Plot Disease Incidence Rates

plot_life_expectancy(): Plot Life Expectancy Across Scenarios and Gender

plot_mortality(): Plot Mortality Rates

plot_population_pyramid(): Create a Population Pyramid Visualization

plot_prevalence(): Plot Disease Prevalence Rates

plot_risk_factor(): Plot Risk Factor Prevalence Rates

Run DYNAMO-HIA interactively

Launch the Shiny app to run DYNAMO-HIA interactively.

launch_application(): Starts the R shiny app to define the settings and then run the HIA Java app.

Create reference data

Functions to create reference data for DYNAMO-HIA.

write_disease_dir(): Write XML files for a disease to a directory

write_population_dir(): Write XML files for a population to a directory

write_risk_factor_dir(): Write XML files for a risk factor to a directory